PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 160aa    MW: 18115.9 Da    PI: 10.0685
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64228.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-122063654
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  ++eY+k+L
  EPS64228.1 20 LMAERRRRKRLNDRLAMLRSVVPKiS------KMDRTSILGDTIEYMKEL 63
                589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-4768No hitNo description
PROSITE profilePS5088815.2561463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-171781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-102063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-132069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-172177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
PERNSKKKSK RVNGQPSKNL MAERRRRKRL NDRLAMLRSV VPKISKMDRT SILGDTIEYM  60
KELMQKIQEL QQQTETTTSD CHLRPSKSSK PNEIAAKNSP KFDVETRKSD TRIEICCGGK  120
EGLLLSTVTT LEGLGLEIQH CVASCFDDFA LQASCFQAIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527KKKSKRVNGQPSKNLMAERRRRK
22229ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226892.16e-68hypothetical protein PRUPE_ppa016514mg, partial
SwissprotQ9LSL15e-58BH093_ARATH; Transcription factor bHLH93
TrEMBLS8DML11e-116S8DML1_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_18s0001g08040.t019e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-55beta HLH protein 93
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]